OMIP-045
Characterizing human head and neck tumors and cancer cell lines with mass cytometry
Cytometry PART A, Volume 93, Issue 4, 406-410 (2018)
Tess M. Brodie, Vinko Tosevski, Michaela Medová
Description: A 42‐parameter panel (34 antibody targets, cisplatin for live/dead, iridium for cell identification, and 6 barcodes) was developed for the characterization of cell types and signaling pathways present in tumor tissues or cell lines originating from primary, metastatic and recurrent head and neck squamous cell carcinoma (HNSCC), the most prevalent malignant tumor of the head and neck region and the 6th most common form of non‐skin cancer worldwide. Importantly, due to overlap in targets and markers across diverse tumor entities [e.g., HER2 amplification is present in both breast and gastric tumors], the described panel may be appropriate for use in preclinical models of additional distinct solid as well as hematological malignancies. This panel has been successfully tested on fresh, formalin‐fixed, and frozen cells originating from cell lines derived from primary and metastatic/recurrent tumors and from patients' tumor tissue.
Species: Human
Tissue: Cell line, Tumor
Cell Subset: Endothelial, Epithelial, B cell, T cell, T memory, Dc, Nk, Macrophage, Monocyte
Keyword: Activation, Cryopreserved tissue, Cytof, Fixed cells, Head and neck squamous cell carcinoma (hnscc), Immune checkpoint, Metastasis, Proliferation
Machine: Fluidigm CyTOF 2.1 Helios
Panel details
Marker | Species | Clone | Fluorophore | Purpose | Co-expressions groups | Antigen Density |
---|---|---|---|---|---|---|
CD29 | Human | TS2/16 | Purified | Metastasis | ||
CD45 | Human | HI30 | Purified | Leukocytes | ||
CD31 | Human | 390 | Purified | Endothelial cells | ||
CD10 | Human | HI10a | Purified | Cancer associated fibroblasts | ||
Vimentin | Human | D21H3 | Purified | Mesenchymal cells | ||
CD68 | Human | Y1/82A | Purified | Macrophages and DCs | ||
CD24 | Human | ML5 | Purified | B cells | ||
CD324 (E-Cadherin) | Human | 24E11 | Purified | Epithelial cells | ||
CD274 (PD-L1) | Human | 29E.2A3 | Purified | Tolerance promotion | ||
CD28 | Human | CD28.2 | Purified | T cell activation | ||
Ki-67 | Human | B56 | Purified | Proliferation | ||
p53 | Human | 261352 | Purified | Tumor suppressor protein | ||
PARP, cleaved | Human | F21-852 | Purified | Repair of single stranded DNA | ||
ERK1/2 (pT202/pY204) | Human | D13.14.4E | Purified | Proliferation | ||
EGFR (pY845) | Human | D7A5 | Purified | Proliferation | ||
HER2/ErbB2 | Human | 29D8 | Purified | Proliferation | ||
Akt (pS473) | Human | D9E | Purified | Survival | ||
EGFR | Human | Purified | Proliferation | |||
Hes1 | Human | 4H1HES1 | Purified | Transcription suppressor | ||
c-Met | Human | eBioclone 97 | Purified | Proliferation | ||
S6 (pS235/pS236) | Human | N7-548 | Purified | Increased translation | ||
CD166 | Human | 3A6 | Purified | Associated with cancer stem cells | ||
CD44 | Human | Purified | Associated with cancer stem cells | |||
PD-1 | Human | EH12.2H7 | Purified | Tolerance promotion | ||
MDR1 | Human | UIC2 | Purified | Drug resistance | ||
CD3 | Human | SK7 | Purified | T cells | ||
Met (pY1234/pY1235) | Human | Purified | Proliferation | |||
DDR2 | Human | 290804 | Purified | Proliferation | ||
TRAF3 | Human | B1-6 | Purified | Associated with HNSCC | ||
YAP1 | Human | 867711 | Purified | Proliferation | ||
EphA2 | Human | SHM16 | Purified | Migration and proliferation | ||
MMP-9 | Human | 4H3 | Purified | Metastasis | ||
TIMP-3 | Human | 277128 | Purified | Metastasis inhibitor | ||
ALDH1A1 | Human | 703410 | Purified | Associated with cancer stem cells |